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Automatically Exposing OpenLifeData via SADI semantic Web Services

By   /  November 25, 2014  /  No Comments

The Journal of Medical Semantics has published an article by Alejandro Rodriguez Gonzalez, Alison Callahan, Jose Cruz-Toledo, et al, entitled “Automatically exposing OpenLifeData via SADI semantic Web Services.”

14578025768_ba3297d452_zThe Journal of Medical Semantics has published an article by Alejandro Rodriguez Gonzalez, Alison Callahan, Jose Cruz-Toledo, et al, entitled “Automatically exposing OpenLifeData via SADI semantic Web Services.” The abstract begins, “Two distinct trends are emerging with respect to how data is shared, collected, and analyzed within the bioinformatics community. First, Linked Data, exposed as SPARQL endpoints, promises to make data easier to collect and integrate by moving towards the harmonization of data syntax, descriptive vocabularies, and identifiers, as well as providing a standardized mechanism for data access. Second, Web Services, often linked together into workflows, normalize data access and create transparent, reproducible scientific methodologies that can, in principle, be re-used and customized to suit new scientific questions.”

It continues, “Constructing queries that traverse semantically-rich Linked Data requires substantial expertise, yet traditional RESTful or SOAP Web Services cannot adequately describe the content of a SPARQL endpoint. We propose that content-driven Semantic Web Services can enable facile discovery of Linked Data, independent of their location.We use a well-curated Linked Dataset – OpenLifeData – and utilize its descriptive metadata to automatically configure a series of more than 22,000 Semantic Web Services that expose all of its content via the SADI set of design principles. The OpenLifeData SADI services are discoverable via queries to the SHARE registry and easy to integrate into new or existing bioinformatics workflows and analytical pipelines.”

The full article is available as a provisional PDF here.

Image: Courtesy Flickr/ Tao Zero

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